Journal: Journal of Neuroinflammation
Article Title: Complement inhibition targets a rich-club within the neuroinflammatory network after stroke to improve radiographic and functional outcomes
doi: 10.1186/s12974-024-03316-z
Figure Lengend Snippet: Study design and analytical pipeline. a Adult C57BL/6 J mice were randomized into either a sham group or subjected to 60 min of transient middle cerebral artery occlusion (MCAO). b – c behavioral testing included neurological severity score (NSS) performed daily, corner task performed on day 4, novel object recognition task (NOR) performed on day 3, and passive avoidance (PA) performed on day 4. (c) MRI scans were conducted on day 4 post-stroke using a 7 T/30 Bruker Biospec animal scanner including T2-weighted imaging, diffusion tensor imaging (DTI) and diffusion kurtosis imaging (DKI). d Mice were sacrificed 5 days post-MCAO, and ipsilateral hemisphere representing the MCA territory was harvested, and homogenized for RNA extraction. e RNA was extracted using the RNeasy Lipid Tissue kit (Qiagen). f High-throughput analysis of immunology-related gene expression was carried out using the Nanostring Mouse Immunology Codeset comprising 561 genes. g Expression data were analyzed, and differentially expressed genes (DEGs) were identified. h Gene Ontology analysis was used to functionally annotate the DEGs. i Using gene interaction data from the STRING database and the weighted gene co-expression network analysis (WGCNA) algorithm, a gene interaction network was constructed using the identified DEGs. j Graph theory methodology was then used to identify the network hub genes, known as “rich-club” genes. k Ingenuity Pathway Analysis (IPA) software was used to identify upstream regulators of the rich-club genes, and the results were visualized using Cytoscape. l In vivo inhibition of C3 activation, an IPA-identified target, was conducted in a similar paradigm to ( a ), and the correlation between treatment and outcomes was analyzed
Article Snippet: We used the transient middle cerebral artery occlusion (MCAO) model in adult C57BL/6j mice (Jackson Laboratories) to mimic clinical stroke and mechanical reperfusion.
Techniques: Imaging, Diffusion-based Assay, RNA Extraction, High Throughput Screening Assay, Gene Expression, Expressing, Construct, Software, In Vivo, Inhibition, Activation Assay